Special

FBgn0000611 @ dm6

Biotype
protein_coding
Gene Symbol
exd
Description
The gene extradenticle is referred to in FlyBase by the symbol Dmelexd (CG8933, FBgn0000611). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is X:15992468..15996509. Its molecular function is described by 12 unique terms, many of which group under: binding; protein binding; DNA binding; transcription regulator activity; heterocyclic compound binding. It is involved in the biological process described with 12 unique terms, many of which group under: animal organ development; anatomical structure morphogenesis; embryo development; oenocyte differentiation; multicellular organism development. 65 alleles are reported. The phenotypes of these alleles manifest in: myofibril; organelle; adult abdominal segment 1; tarsal segment; midline crossing tract. The phenotypic classes of alleles include: embryonic/larval segmentation phenotype; some die during P-stage; increased mortality; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, during early pupal stages.
Coordinates
chrX:15992468-15996509:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Intron Retention
63
chrX:15994284-15994346
+
4.3
87.1
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000105717 PBX4 1-to-4
Human hg38 ENSG00000167081 PBX3 1-to-4
Human hg38 ENSG00000185630 PBX1 1-to-4
Human hg38 ENSG00000204304 PBX2 1-to-4
Human hg19 ENSG00000105717 PBX4 1-to-4
Human hg19 ENSG00000167081 PBX3 1-to-4
Human hg19 ENSG00000185630 PBX1 1-to-4
Human hg19 ENSG00000204304 PBX2 1-to-4
Mouse mm10 ENSMUSG00000031860 Pbx4 1-to-4
Mouse mm10 ENSMUSG00000034673 Pbx2 1-to-4
Mouse mm10 ENSMUSG00000038718 Pbx3 1-to-4
Mouse mm10 ENSMUSG00000052534 Pbx1 1-to-4
Mouse mm9 ENSMUSG00000031860 Pbx4 1-to-4
Mouse mm9 ENSMUSG00000034673 Pbx2 1-to-4
Mouse mm9 ENSMUSG00000038718 Pbx3 1-to-4
Mouse mm9 ENSMUSG00000052534 Pbx1 1-to-4
Rat rn6 ENSRNOG00000004693 Pbx1 1-to-3
Rat rn6 ENSRNOG00000010736 Pbx4 1-to-3
Rat rn6 ENSRNOG00000022162 Pbx3 1-to-3
Cow bosTau6 ENSBTAG00000009975 PBX4 1-to-4
Cow bosTau6 ENSBTAG00000013314 PBX3 1-to-4
Cow bosTau6 ENSBTAG00000013801 PBX1 1-to-4
Cow bosTau6 ENSBTAG00000014421 PBX2 1-to-4
Chicken galGal4 ENSGALG00000000972 PBX3 1-to-3
Chicken galGal4 ENSGALG00000003429 PBX1A 1-to-3
Chicken galGal3 ENSGALG00000000972 F1P3W1_CHICK 1-to-3
Chicken galGal3 ENSGALG00000003429 F1NQJ4_CHICK 1-to-3
Zebrafish danRer10 ENSDARG00000013615 pbx3b 1-to-7
Zebrafish danRer10 ENSDARG00000019717 pbx2 1-to-7
Zebrafish danRer10 ENSDARG00000089262 pbx3a 1-to-7
Zebrafish danRer10 ENSDARG00000100494 pbx1a 1-to-7
Zebrafish danRer10 ENSDARG00000101131 pbx1b 1-to-7