Special

FBgn0028671 @ dm6

Biotype
protein_coding
Gene Symbol
Vha100-1
Description
The gene Vacuolar H[+] ATPase 100kD subunit 1 is referred to in FlyBase by the symbol DmelVha100-1 (CG1709, FBgn0028671). It is a protein_coding_gene from Dmel. It has 11 annotated transcripts and 11 polypeptides (5 unique). Gene sequence location is 3R:29131193..29137980. Its molecular function is described by: proton-transporting ATPase activity, rotational mechanism; ATPase binding; photoreceptor activity; calmodulin binding. It is involved in the biological process described with 7 unique terms, many of which group under: anatomical structure development; system development; response to stimulus; cellular metabolic process; ion transmembrane transport. 21 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; vacuole; membrane-bounded organelle; organelle; cytoplasm. The phenotypic classes of alleles include: stress response defective; increased mortality during development; phenotype; sensory perception defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chr3R:29131193-29137980:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
37.63
100
0
Alternative 3'ss
66
chr3R:29133272-29133337
+
62.37
100
0
Exon Skipping
140
chr3R:29131686-29131825
+
99.44
33.33
0
Exon Skipping
6
chr3R:29136905-29136910
+
22.37
91.95
0
Exon Skipping
158
chr3R:29133272-29133429
+
49.32
97.14
0
Exon Skipping
101
chr3R:29133861-29133961
+
49.31
86.19
0
Exon Skipping
42
chr3R:29134557-29134598
+
19.24
65.73
0
Intron Retention
238
chr3R:29131448-29131685
+
89.21
66.67
0
Intron Retention
73
chr3R:29132303-29132375
+
4.34
62
0
Intron Retention
833
chr3R:29132505-29133337
+
60.58
89.07
0
Intron Retention
1619
chr3R:29133430-29135048
+
12.78
41.23
0
Intron Retention
376
chr3R:29136700-29137075
+
4.77
55.64
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000033627 ATP6V0A1 2-to-1
Human hg19 ENSG00000033627 ATP6V0A1 2-to-1
Mouse mm10 ENSMUSG00000019302 Atp6v0a1 2-to-1
Mouse mm9 ENSMUSG00000019302 Atp6v0a1 2-to-1
Rat rn6 ENSRNOG00000036814 Atp6v0a1 1-to-1
Cow bosTau6 ENSBTAG00000019218 ATP6V0A1 2-to-1
Chicken galGal4 ENSGALG00000003256 ATP6V0A1 2-to-1
Chicken galGal3 ENSGALG00000003256 ATP6V0A1 2-to-1
Zebrafish danRer10 ENSDARG00000015174 atp6v0a1b 2-to-2
Zebrafish danRer10 ENSDARG00000020847 atp6v0a1a 2-to-2