Special

FBgn0036059 @ dm6

Biotype
protein_coding
Gene Symbol
nudE
Description
The gene nudE is referred to in FlyBase by the symbol Dmel udE (CG8104, FBgn0036059). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (4 unique). Gene sequence location is 3L:9899241..9903031. Its molecular function is described by: microtubule binding. It is involved in the biological process described with 20 unique terms, many of which group under: organelle fission; anatomical structure formation involved in morphogenesis; regulation of microtubule motor activity; spindle localization; regulation of nervous system development. 19 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; microtubule cytoskeleton; neuron projection; intracellular organelle; cell projection. The phenotypic classes of alleles include: lethal; viable; neuroanatomy defective; mitotic cell cycle defective; visible; body color defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes.
Coordinates
chr3L:9898703-9903031:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
94.24
60
0
Alternative 5'ss
302
chr3L:9899356-9899657
+
2.22
57.14
0
Intron Retention
370
chr3L:9899356-9899725
+
11.02
88
0
Intron Retention
1132
chr3L:9901019-9902150
+
31.47
82.01
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000072864 NDE1 1-to-2
Human hg38 ENSG00000166579 NDEL1 1-to-2
Human hg19 ENSG00000072864 NDE1 1-to-2
Human hg19 ENSG00000166579 NDEL1 1-to-2
Mouse mm10 ENSMUSG00000018736 Ndel1 1-to-2
Mouse mm10 ENSMUSG00000022678 Nde1 1-to-2
Mouse mm9 ENSMUSG00000018736 Ndel1 1-to-2
Mouse mm9 ENSMUSG00000022678 Nde1 1-to-2
Rat rn6 ENSRNOG00000004139 Ndel1 1-to-2
Rat rn6 ENSRNOG00000058007 Nde1 1-to-2
Cow bosTau6 ENSBTAG00000011994 NDEL1 1-to-2
Cow bosTau6 ENSBTAG00000015986 NDE1 1-to-2
Chicken galGal4 ENSGALG00000001163 NDEL1 1-to-2
Chicken galGal3 ENSGALG00000001163 NDEL1_CHICK 1-to-2
Zebrafish danRer10 ENSDARG00000010953 ndel1a 1-to-3
Zebrafish danRer10 ENSDARG00000103902 nde1 1-to-3
Zebrafish danRer10 ENSDARG00000104225 ndel1b 1-to-3