Special

FBgn0260642 @ dm6

Biotype
protein_coding
Gene Symbol
Antp
Description
The gene Antennapedia is referred to in FlyBase by the symbol DmelAntp (CG1028, FBgn0260642). It is a protein_coding_gene from Dmel. It has 13 annotated transcripts and 13 polypeptides (5 unique). Gene sequence location is 3R:6896253..6999228. Its molecular function is described by: DNA-binding transcription factor activity, RNA polymerase II-specific; sequence-specific DNA binding; DNA binding; RNA polymerase II cis-regulatory region sequence-specific DNA binding. It is involved in the biological process described with 13 unique terms, many of which group under: multicellular organism development; multicellular organismal process; developmental process; regionalization; animal organ development. 177 alleles are reported. The phenotypes of these alleles manifest in: circulatory system; melanotic mass; embryonic/larval mesothoracic dorsal sensory cluster; abdomen; neuroblast NB3-3. The phenotypic classes of alleles include: viable; lethal; phenotype; increased mortality during development. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis.
Coordinates
chr3R:6896253-6999228:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
54.07
86.26
0
Alternative 5'ss
12
chr3R:6908513-6908524
-
45.93
86.26
0
Exon Skipping
39
chr3R:6908873-6908911
-
76.34
95.43
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000122592 HOXA7 1-to-2
Human hg38 ENSG00000260027 HOXB7 1-to-2
Human hg19 ENSG00000122592 HOXA7 1-to-2
Mouse mm10 ENSMUSG00000038236 Hoxa7 1-to-2
Mouse mm10 ENSMUSG00000038721 Hoxb7 1-to-2
Mouse mm9 ENSMUSG00000038236 Hoxa7 1-to-2
Mouse mm9 ENSMUSG00000038721 Hoxb7 1-to-2
Rat rn6 ENSRNOG00000007611 Hoxb7 1-to-4
Rat rn6 ENSRNOG00000046361 NEWGENE_1587253 1-to-4
Rat rn6 ENSRNOG00000049858 Hoxa7 1-to-4
Rat rn6 ENSRNOG00000060292 LOC100911622 1-to-4
Cow bosTau6 ENSBTAG00000001455 HOXA7 1-to-2
Cow bosTau6 ENSBTAG00000005546 HOXB7 1-to-2
Chicken galGal4 ENSGALG00000026989 HOXA7 1-to-2
Zebrafish danRer10 ENSDARG00000056030 hoxb7a 1-to-1