BtaALTA0001017-2/2 @ bosTau6
Alternative 3'ss
Description
Bos taurus zinc finger protein 177 (ZNF177), mRNA. [Source:RefSeq mRNA;Acc:NM_001102550]
Coordinates
chr7:15342466-15343106:+
Coord C1 exon
chr7:15342466-15342592
Coord A exon
chr7:15342918-15343013
Coord C2 exon
chr7:15343014-15343106
Length
96 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
CTGCTCTTGCCTATCTTTAGAAT
3' ss Score
8.89
Exon sequences
Seq C1 exon
GAGTTGGTGACCTTCGAGGAAGTGTCAGTGGACTTCTCACAGGAGGAGTGGGCCCTGCTGGCCCCCACTCAGAAAATCCTGTACAGAGATGTGATGTTGGAGAACTTTAGGAACCTGGCCTCAGTGG
Seq A exon
AATCCTTGAAAACCAAAGTATTGGAATCAGTTTTGTGGAAAGACTCCTTGTCTCCTTCACAGTCTCCCCACATCATATGTCTTTTCCCATGAGCAG
Seq C2 exon
GGTATCATCTCTGCAAACACAGTCCAATCACTGAGGTGGCGCAGGAAGAACTGAGGCCAGAGGGGAGAGGAATTCTCCAAAGTGCTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039493-7-11,7-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGGAAGTGTCAGTGGACT
R:
CCTCTGGCCTCAGTTCTTCCT
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development