BtaINT0007977 @ bosTau6
Intron Retention
Description
Bos taurus zinc finger protein 177 (ZNF177), mRNA. [Source:RefSeq mRNA;Acc:NM_001102550]
Coordinates
chr7:15342466-15343106:+
Coord C1 exon
chr7:15342466-15342592
Coord A exon
chr7:15342593-15343013
Coord C2 exon
chr7:15343014-15343106
Length
421 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
ATGTCTTTTCCCATGAGCAGGGT
3' ss Score
6.45
Exon sequences
Seq C1 exon
GAGTTGGTGACCTTCGAGGAAGTGTCAGTGGACTTCTCACAGGAGGAGTGGGCCCTGCTGGCCCCCACTCAGAAAATCCTGTACAGAGATGTGATGTTGGAGAACTTTAGGAACCTGGCCTCAGTGG
Seq A exon
GTAAAGTTGGCCTCATTCCTTCATATTCACTTGTTTGTGCATGTACTAGTTCATCACTTGTCTCTCCCAGGAACTGAAAAGAACAGCTATACACGGTAAACACAGAATGGACTGTTCCTGCCCTTGTTGGGAAGTCTTATCACTTCCCAAGAAAATTCACTGATTGTATTTTCTCAGTTCTTAAAAAATTTAGGTAATTTACAGATCTTGGGCTTAGAATTCAAGAGTCAGATCATGTGGGAAAAGGTGTGTGGGTGTTTGTCTTATGGTGCTCTGTGAAAAGGCTATGTAATCTGATTCTTTTGCTGCTCTTGCCTATCTTTAGAATCCTTGAAAACCAAAGTATTGGAATCAGTTTTGTGGAAAGACTCCTTGTCTCCTTCACAGTCTCCCCACATCATATGTCTTTTCCCATGAGCAG
Seq C2 exon
GGTATCATCTCTGCAAACACAGTCCAATCACTGAGGTGGCGCAGGAAGAACTGAGGCCAGAGGGGAGAGGAATTCTCCAAAGTGCTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039493:ENSBTAT00000056477:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACCTTCGAGGAAGTGT
R:
TGTACAAGCACTTTGGAGAATTCCT
Band lengths:
215-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]