BtaEX0001285 @ bosTau6
Exon Skipping
Description
Bos taurus zinc finger protein 177 (ZNF177), mRNA. [Source:RefSeq mRNA;Acc:NM_001102550]
Coordinates
chr7:15341518-15343106:+
Coord C1 exon
chr7:15341518-15341603
Coord A exon
chr7:15342466-15342592
Coord C2 exon
chr7:15343014-15343106
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTATACATGGTGTTTTAGGAG
3' ss Score
7.04
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
Exon sequences
Seq C1 exon
GTCTTCATGGTCAGAACCCTGCCAAGCCAGAAGGGAGACACACAAAAGAAAGAATGGCTGCAGGATTGCTGACAACCTGGTCACAG
Seq A exon
GAGTTGGTGACCTTCGAGGAAGTGTCAGTGGACTTCTCACAGGAGGAGTGGGCCCTGCTGGCCCCCACTCAGAAAATCCTGTACAGAGATGTGATGTTGGAGAACTTTAGGAACCTGGCCTCAGTGG
Seq C2 exon
GGTATCATCTCTGCAAACACAGTCCAATCACTGAGGTGGCGCAGGAAGAACTGAGGCCAGAGGGGAGAGGAATTCTCCAAAGTGCTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039493_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCATGGTCAGAACCCTGC
R:
TGTACAAGCACTTTGGAGAATTCCT
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development