HsaEX0073107 @ hg19
Exon Skipping
Gene
ENSG00000188629 | ZNF177
Description
zinc finger protein 177 [Source:HGNC Symbol;Acc:12966]
Coordinates
chr19:9488932-9490295:+
Coord C1 exon
chr19:9488932-9489020
Coord A exon
chr19:9489638-9489764
Coord C2 exon
chr19:9490203-9490295
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATATGTATGTGATGTTTTAGAAC
3' ss Score
7.33
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
TAGCTCTGCCTGCTTAGGACTCTGCCCAGCCAGGAAGGAAACCTACAGGAGGAAGAATGGCTGCAGGGTGGCTGACAACCTGGTCACAG
Seq A exon
AACTCAGTAACCTTCCAGGAAGTGGCAGTGGACTTTTCCCAGGAGGAGTGGGCATTGCTGGACCCTGCTCAAAAAAATCTATACAAAGATGTGATGCTGGAGAACTTTAGGAACCTGGCCTCAGTAG
Seq C2 exon
GGTATCAGCTCTGCAGACACAGTCTGATCTCCAAGGTGGATCAAGAACAGCTGAAGACAGATGAAAGAGGAATTTTACAAGGTGACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188629_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCCTGCTTAGGACTCT
R:
TGCACAGTCACCTTGTAAAATTCC
Band lengths:
179-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)