HsaEX0073107 @ hg38
Exon Skipping
Gene
ENSG00000188629 | ZNF177
Description
zinc finger protein 177 [Source:HGNC Symbol;Acc:HGNC:12966]
Coordinates
chr19:9378259-9379619:+
Coord C1 exon
chr19:9378259-9378344
Coord A exon
chr19:9378962-9379088
Coord C2 exon
chr19:9379527-9379619
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATATGTATGTGATGTTTTAGAAC
3' ss Score
7.33
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CTCTGCCTGCTTAGGACTCTGCCCAGCCAGGAAGGAAACCTACAGGAGGAAGAATGGCTGCAGGGTGGCTGACAACCTGGTCACAG
Seq A exon
AACTCAGTAACCTTCCAGGAAGTGGCAGTGGACTTTTCCCAGGAGGAGTGGGCATTGCTGGACCCTGCTCAAAAAAATCTATACAAAGATGTGATGCTGGAGAACTTTAGGAACCTGGCCTCAGTAG
Seq C2 exon
GGTATCAGCTCTGCAGACACAGTCTGATCTCCAAGGTGGATCAAGAACAGCTGAAGACAGATGAAAGAGGAATTTTACAAGGTGACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188629-'5-9,'5-6,7-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCTGCTTAGGACTCTGC
R:
CTGCACAGTCACCTTGTAAAATTCC
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development