HsaINT0186317 @ hg38
Intron Retention
Gene
ENSG00000188629 | ZNF177
Description
zinc finger protein 177 [Source:HGNC Symbol;Acc:HGNC:12966]
Coordinates
chr19:9378259-9379088:+
Coord C1 exon
chr19:9378259-9378344
Coord A exon
chr19:9378345-9378961
Coord C2 exon
chr19:9378962-9379088
Length
617 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
ATATGTATGTGATGTTTTAGAAC
3' ss Score
7.33
Exon sequences
Seq C1 exon
CTCTGCCTGCTTAGGACTCTGCCCAGCCAGGAAGGAAACCTACAGGAGGAAGAATGGCTGCAGGGTGGCTGACAACCTGGTCACAG
Seq A exon
GTACACAAGAAATTTCTCTATTTCCAAAAGCACACTGCCATTCCTGAAAAGAACACATCTCTTGCCCCTGACCTGAAGCTTCACAGCCCAATCTGAGCTGGCTTCATCTTCCGCAGCTCCCAGGCTGCTTCATGTGGAAGAGGGAATCCCTGGGAAAGGCTTCTGTTCCCACATTTGTTAACTTTCTCCAGATATTCTTCCATATTTTTGAGTATGAATTCCATACTGTAGTGAGTGCTGTAAAGAAAGACTTTTACTAGGAAAATTATTTATCATTTCTCAAGTATTTCTTGCATTCCTACAGTATGCCCTGTCTATACTGGATCTGAATAAGACGAAAAGAGTCCTCACAACCTAACTGTGCAAAGATCAAGCCAACCATATTTTAGAAAAGCTGTTTTGACCATGACCCTGAATGAGATGGCCCAGGGAGTAGGATTTAAAGAGAGTTCTGAGAACTCAGCTTTAAGGCAAATTAAGAGAAGGCCTCTGATGCATGTCTGAGCTTCCAGTGCCCTGAGTCTCCTCTCCAGTCCTGTCAGCCTCACCCACCATTCTCCTGGTACATTGTCAAAAATGGTCATTGGCTGAGCCAGAATATGTATGTGATGTTTTAG
Seq C2 exon
AACTCAGTAACCTTCCAGGAAGTGGCAGTGGACTTTTCCCAGGAGGAGTGGGCATTGCTGGACCCTGCTCAAAAAAATCTATACAAAGATGTGATGCTGGAGAACTTTAGGAACCTGGCCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188629:ENST00000589262:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCTGCTTAGGACTCTGC
R:
ACTGAGGCCAGGTTCCTAAAGT
Band lengths:
210-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains