HsaINT0186317 @ hg19
Intron Retention
Gene
ENSG00000188629 | ZNF177
Description
zinc finger protein 177 [Source:HGNC Symbol;Acc:12966]
Coordinates
chr19:9488935-9489764:+
Coord C1 exon
chr19:9488935-9489020
Coord A exon
chr19:9489021-9489637
Coord C2 exon
chr19:9489638-9489764
Length
617 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
ATATGTATGTGATGTTTTAGAAC
3' ss Score
7.33
Exon sequences
Seq C1 exon
CTCTGCCTGCTTAGGACTCTGCCCAGCCAGGAAGGAAACCTACAGGAGGAAGAATGGCTGCAGGGTGGCTGACAACCTGGTCACAG
Seq A exon
GTACACAAGAAATTTCTCTATTTCCAAAAGCACACTGCCATTCCTGAAAAGAACACATCTCTTGCCCCTGACCTGAAGCTTCACAGCCCAATCTGAGCTGGCTTCATCTTCCGCAGCTCCCAGGCTGCTTCATGTGGAAGAGGGAATCCCTGGGAAAGGCTTCTGTTCCCACATTTGTTAACTTTCTCCAGATATTCTTCCATATTTTTGAGTATGAATTCCATACTGTAGTGAGTGCTGTAAAGAAAGACTTTTACTAGGAAAATTATTTATCATTTCTCAAGTATTTCTTGCATTCCTACAGTATGCCCTGTCTATACTGGATCTGAATAAGACGAAAAGAGTCCTCACAACCTAACTGTGCAAAGATCAAGCCAACCATATTTTAGAAAAGCTGTTTTGACCATGACCCTGAATGAGATGGCCCAGGGAGTAGGATTTAAAGAGAGTTCTGAGAACTCAGCTTTAAGGCAAATTAAGAGAAGGCCTCTGATGCATGTCTGAGCTTCCAGTGCCCTGAGTCTCCTCTCCAGTCCTGTCAGCCTCACCCACCATTCTCCTGGTACATTGTCAAAAATGGTCATTGGCTGAGCCAGAATATGTATGTGATGTTTTAG
Seq C2 exon
AACTCAGTAACCTTCCAGGAAGTGGCAGTGGACTTTTCCCAGGAGGAGTGGGCATTGCTGGACCCTGCTCAAAAAAATCTATACAAAGATGTGATGCTGGAGAACTTTAGGAACCTGGCCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188629-ZNF177:NM_003451:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCTGCTTAGGACTCTGC
R:
ACTGAGGCCAGGTTCCTAAAGT
Band lengths:
210-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)