MmuINT0132392 @ mm9
Intron Retention
Gene
ENSMUSG00000061898 | Rbak
Description
RB-associated KRAB repressor [Source:MGI Symbol;Acc:MGI:1927369]
Coordinates
chr5:143938144-143941221:-
Coord C1 exon
chr5:143941165-143941221
Coord A exon
chr5:143938271-143941164
Coord C2 exon
chr5:143938144-143938270
Length
2894 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTCTGATCATGTCGTTGCAGGGC
3' ss Score
7.11
Exon sequences
Seq C1 exon
GTCAGTCAGCAGTGTCTACAGTTCCCCCAAGAGGAGCAGAACATGAGCAGATCAAAG
Seq A exon
GTAAGTTTTTCCCGTTTGTAATTTTTTTTTTTCTGACTCCTTTGTAATGTATTTTGGAAGACTTACTCAAAGGTCTGTTCTTGAATGGTAGTGGAGTGGTCTCTAAAGGGATCTGACGCCCTCTTCTGGCATGCAGGTGTACATGCAGCAGAGCATCCATACATAGAATAATTAATAAGTAAGTAGGATGGTCGTGGAGAAAGGAGTGAATAAAGGTGATTGTAATATAAAATACACCCGAGTGGCAGGCTGTCATGACCTGTTGTGTAGGCAGTCTGATAACTTTAGGCTAATGGAGTTACTTGGCAGAGTTAGAAAAAGGAAAATCGTATCCATCCCATCACCTGCAGCTGCTCGTGGGAGGTGCCGTTTTTTGTACCTTATAGGAGGCAAAGACTTGCTAGGATTTGGACATCTTCCTTTAGTCAGGTTGGGATGATTTTTGCATTTTGAAAATTTACCTTGACAAGAGCAGCTTGAGGGAGAAAGGGCTTATTCTGCTCACAGTGGCAGAGTACAGTCCACCACGGTGGGAAGGGCACAGAAGCTTACTTTGAGGAAGCTGAAAATGTATATATTTTCTGAAGTCAGGAAGGGAAGAGGAAAGCATGCCCACCATGATGGACAGTACTCTGGAACATAGAGTCATAGAAAAGTTACAGAGAAACAAAAGAATTATACAAAGAAATCTTTCATTCCGTTTGCTCCAAAGTTGCATTTTTTAAACAGTTTTTAAAAAATTTGTTTTGTATGTGCCTACATGTGTGCATGTGTGTGGTCCAGTATGCACGTGAAGGTCAGAGCACAACTTGTGGGAGTCCGTTCTCTCCCTCCATACAGGTCCATAGAACTATGGAGTCATACATAGAATTATAAAGTCTCATACATAGAATCATAGAGTTTCATATGCAGACTCATAGTCTTGTACACAGACTCATAGAGTCTCATACATAGAATCATAGTCTTATGCATAAATAAATCACATGGTTTCATACAGTGAGTGCTCAGCCCACCTTGTCTTTGTATGGTCCAAGATCTAAGCCAAGGGAATGAAGCCGCACACAGTGGGCAGGCTTTCCTGCCCCAGTTTACCTCATCAAGAGAATCCCCCACAAGAATGACTGACTAGCCCTTGGTCTATTTCTCCAGCAATTCAGAGTCTCATCACATTGACCACTGAGATGAACCATCAGTAGAGGTGGTGAGTTCACAGAGGGGAGTACTTTGCTCAACTTAGGGAAACAAAAAGCCTGTCCAGTGTGGATAGCGTTGAATGGATGTCCTGGTTTGTCTGATGCAGTCTTGAATTGGATCTATATTCCTAATAATTCCATGTAGATGGTCTTTTATTTCATACAGAGGTTTTCTTTTAAACAGTGCATCTGTGATCTTATCACACAGCTGTCCAAGAAATCCTGTACTTTAACCATGAGCCCCATGAGATAGCTCTGCAAGGACTCTGCTGGAGAGTCTGCTGTTTGTTTTGGCTGCAGACCAGTATCCCCTAGATAAAGTTATATGACTCAAGGCTGTGGTTTCTCTTCTCCATAACTCTTCTCTGTACCTAAAAGGTAGCACTGAGAAATTCCTGTGACTGGAATCTGCCTTCCACTGCTCTTAGAAGAATGGAATGTGGTTTTCTGTTTCTTTTTTTAAATATGTATTTATTATTTTTGTGTTGATAATTTGTGTGCCTTTTTGAGTTTCTGTGTCCCGTGTGCATGTAGGAGCTAACAGGCCAGAAGAGGGCGCCAGAGCTCTATAACTGGAGTTACCAGGCAGTTGTAAGCTGCCAAACATGGGTGCTGGGAACCGAACTCAGGTCCTCTGCAAGAGCAACAAGCACTCTAACATGGGTGAGCCATCATGCTAACCCCAGGACTTTGGTTTTTGAATTGGGAAGATAATCATATGTGGTTAGTAACTCCTAATTTAAAGTTGGCCCTCCCTGTCACTGTCAGAAGCTGCCTGCAGGAAAGTGCCACCTTGGTGTCTTTCCACCTCCCTTTCTGCCCCACCTCTACGTCCTGGTGCTTGTCAGTCTGTCCCTTTTCTGAGGCCCCACCTTTCCTTGTATGTCTTACTCTAGTAACACCTTTGGGCTTCGATTCTATTCTCTTTTTTTAATGTTACATGTTATTACATGTTTGCGTTGAAAGCTGAAATAAACTCTACAAATGCTTGTTGACTTTCAGACGAAATATGCAGAGCTCAAGGAGGTGAAATCTGGGCCAGCAGATGACTCAGCGAGTAAAGGCCCACCACCACCACACCTGACAACTTGAGTTTAATCCCCTAAACCCACACGGTGGAATGAGAGAACCGAACCGCTGTGATAAAATACCCTGAGAGGCAACCTGAGGGAGAAGGGTTTGCTTAGCGCACAGTTCCAGGTTATGACCCCCAACTCTGGATGTCAAGGCAGCGACGTTAAGCAGCTGCTCATGTTACAGCCACAGTGAAGAGCAAAGGGCACTGAACTAATGCGTGCTTGGTAGCGCTCAGCTTGCTTTCTCTACTCTTACAGAATGCAGGATCTCTGTCCAGGGGATGATGCCACCCACAGTGGGTGGGTCTTCCCACCTCAGTTAACATAAGAAACACTCTGCCACAGGCTAACCTGGTTAGACAGTCCCTATTGCACCCCGTTCCCAGATGACTCTAGGTTATGTCAAGTTGACAGTTACCTGTCACATCAGAGCTTTGCTTTTGCTTTTGTTTGCCAAGACAACGTGTTTACAATACGATGCTGAGATTTACTGCAACAATACGGTTTGTTTCCCTTCCGGGCTTTGTAGCATAAAGTAAGGTATGCAGTGTTAATGGTTAACTGGACCAGTGAGCTCGGGTGCCCGCTCTGTGTGATCTATCTGATTCTGATCATGTCGTTGCAG
Seq C2 exon
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACCCTGAGGAGAGGACCACATACAGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061898-Rbak:NM_001045482:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.178
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: