HsaINT0186318 @ hg38
Intron Retention
Gene
ENSG00000188629 | ZNF177
Description
zinc finger protein 177 [Source:HGNC Symbol;Acc:HGNC:12966]
Coordinates
chr19:9378962-9379619:+
Coord C1 exon
chr19:9378962-9379088
Coord A exon
chr19:9379089-9379526
Coord C2 exon
chr19:9379527-9379619
Length
438 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
CTTGCTTTCTGCGTGAGCAGGGT
3' ss Score
5.85
Exon sequences
Seq C1 exon
AACTCAGTAACCTTCCAGGAAGTGGCAGTGGACTTTTCCCAGGAGGAGTGGGCATTGCTGGACCCTGCTCAAAAAAATCTATACAAAGATGTGATGCTGGAGAACTTTAGGAACCTGGCCTCAGTAG
Seq A exon
GTAAGGCTGGCCTCATTTCTTCATTTGTTTATGTAGCAAATAGTTCTTAAGCACATATTATGTTCCAGAATCTGTGGAAAGAATAGCAATACAGTGGTTAACCCCAAAATGAATGGTCCCTGCCCTTGAGGGGGCAGTCCAGTGGCTTCCCATGAAAATGCACTGATTTCATTTTCTCTATCACTAATAGCTTAAGGTAATTTGCAATCTGTGTCTCATCTTGTGTATAGGTTTCAAGGGTCACTTCCATATAGGGCGTGGACCATGCTTTTTGGTTCTTGTGAAAGAAAGAGCTCGGCTCTGATTGTTTTGTTGTTCCTAAAGCTGCACTTGACTATTTTAATAATCCTTTAGTTAAAGCCAAAGTATGGCAATCAGTTTTGTGGAATATTTAATTCTCACACATTTCTCCCACATCCTTGCTTTCTGCGTGAGCAG
Seq C2 exon
GGTATCAGCTCTGCAGACACAGTCTGATCTCCAAGGTGGATCAAGAACAGCTGAAGACAGATGAAAGAGGAATTTTACAAGGTGACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188629:ENST00000589262:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTAACCTTCCAGGAAGTG
R:
TGCACAGTCACCTTGTAAAATTCC
Band lengths:
218-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains