BtaALTA0006431-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30889716-30903109:-
Coord C1 exon
chr16:30903026-30903109
Coord A exon
NA
Coord C2 exon
chr16:30889716-30889807
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTTTTTTCCTTTTCAGACAGCAT
3' ss Score
3.41
Exon sequences
Seq C1 exon
GTTGCTGTAGTGAAACTAAAAAATGCAGATAAAGTATTTGCCATGAAAATATTGAATAAATGGGAAATGCTGAAAAGAGCTGAG
Seq A exon
NA
Seq C2 exon
CATGTTTTCGTGAAGAAAGGGATGTGTTAGTGAATGGAGACAATAAATGGATTACAACTTTGCATTATGCTTTCCAGGATGACAATAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777-4-6,4-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAATGCTGAAAAGAGCTGA
R:
TGTCATCCTGGAAAGCATAATGC
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development