GgaALTA1007780-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11686642-11690547:+
Coord C1 exon
chr3:11686642-11686725
Coord A exon
NA
Coord C2 exon
chr3:11690456-11690547
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TTTTTTCCCCCTTCAGACAGCAT
3' ss Score
3.64
Exon sequences
Seq C1 exon
GTTGCAGTAGTAAAACTGAAGAATGCAGATAAGGTTTTTGCCATGAAGATACTTAATAAGTGGGAGATGCTGAAGAGAGCTGAA
Seq A exon
NA
Seq C2 exon
CATGTTTTCGAGAAGAGAGAGATGTGTTAGTGAATGGAGATAACCAGTGGATCACAACATTACATTACGCGTTCCAGGATGAAAACTATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-8-8,8-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGATGCTGAAGAGAGCT
R:
TCATCCTGGAACGCGTAATGT
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]