BtaALTA0006798-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62641890-62643031:+
Coord C1 exon
chr16:62641890-62641962
Coord A exon
chr16:62642985-62642987
Coord C2 exon
chr16:62642988-62643031
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TAAATATTAATGTTGCCCAGCAG
3' ss Score
1.33
Exon sequences
Seq C1 exon
ATGAGGAGCAGCAGATCAAAAGAGGTGCCTTTACCAAATCCAAGGAACTCTCAAAGCACGGATACTATTCAAG
Seq A exon
CAG
Seq C2 exon
ATATAACCGCACCATGGGATGCACTTTCTCAGACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGATCAAAAGAGGTGC
R:
GCCTTGGTCTGAGAAAGTGCA
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development