RnoALTA0008419-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73620570-73622211:-
Coord C1 exon
chr13:73622139-73622211
Coord A exon
chr13:73620614-73620616
Coord C2 exon
chr13:73620570-73620613
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TATATGTCGCTTTTTCTTAGTAG
3' ss Score
3.88
Exon sequences
Seq C1 exon
ATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCCAATCCAAGGAACTCTCAAAGCAAGGAGACTGTTCAAG
Seq A exon
TAG
Seq C2 exon
ATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882-4-6,4-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.584
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAGTCAAAAGAGGTGC
R:
GCCTTGGTCTGAGAAAGTGCA
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]