HsaALTA0001804-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:179986169-179987286:+
Coord C1 exon
chr1:179986169-179986254
Coord A exon
chr1:179987240-179987242
Coord C2 exon
chr1:179987243-179987286
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
AATATCATTTTTTTTCCCAGCAG
3' ss Score
5.8
Exon sequences
Seq C1 exon
GTAAATTGGCAGGATGAGGAGCAGCAAATCAAAAGAGGTGCCTTTACCAAATCCAAGGAACTCTCAAAGCAAGGATACTGTTCAAG
Seq A exon
CAG
Seq C2 exon
ATATAACCACATCGTGGGATGCACTTTCTCAAACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-7-11,7-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=0.396
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAATCAAAAGAGGTGCC
R:
AGCCTTGGTTTGAGAAAGTGCA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development