HsaEX6035238 @ hg38
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:179979305-179987286:+
Coord C1 exon
chr1:179979305-179979405
Coord A exon
chr1:179986169-179986254
Coord C2 exon
chr1:179987240-179987286
Length
86 bp
Sequences
Splice sites
3' ss Seq
GAATACTGATGTGATTGCAGGTA
3' ss Score
3.59
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
CCTGATGCTTAGTGATGTTGAGCTTTTTAAAAACATGTTTCTTGACCATTTGTGTTTGCCCATTTTTAATTAGATTATTTGGGGTGTTTTTTTTTTTTTTT
Seq A exon
GTAAATTGGCAGGATGAGGAGCAGCAAATCAAAAGAGGTGCCTTTACCAAATCCAAGGAACTCTCAAAGCAAGGATACTGTTCAAG
Seq C2 exon
CAGATATAACCACATCGTGGGATGCACTTTCTCAAACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-'5-10,'5-7,7-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.980 C2=0.431
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGCTTAGTGATGTTGAGCT
R:
AGCCTTGGTTTGAGAAAGTGCA
Band lengths:
145-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains