DreEX0020917 @ danRer10
Exon Skipping
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14566228-14569581:-
Coord C1 exon
chr8:14569499-14569581
Coord A exon
chr8:14566817-14566913
Coord C2 exon
chr8:14566228-14566271
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCCCTTTCCTCTTAGGTT
3' ss Score
12.45
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
AGGTGGCAGAACCGCCAGCTGTCCAATGTGTCCAGCTGACCCGAAGACCAGGTGGACTCATGTCTGAATAAAGCTGCTGGAAA
Seq A exon
GTTGGCATAGCGATGTGGAGTCGCTTGCGAAGTGAGGCGGGGCCACCAGCCTCTGTCCCTTCCCAGCCTCCCTTTGCTGGGCAAGACAACAGGAGAG
Seq C2 exon
AGATATCTCAAGCCTGGAATTGTATAAATCAGACCAAAGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.533
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCGCCAGCTGTCCAATG
R:
GGCAGCTTTGGTCTGATTTATACA
Band lengths:
119-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]