RnoEX0020096 @ rn6
Exon Skipping
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73620570-73638073:-
Coord C1 exon
chr13:73637714-73638073
Coord A exon
chr13:73622139-73622224
Coord C2 exon
chr13:73620570-73620616
Length
86 bp
Sequences
Splice sites
3' ss Seq
TATTGATGATGTAATTGCAGGTA
3' ss Score
4.19
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CACTGCCGCCGGCGCCGCTCCTCCTCCGTGTCAGTTGTTGAGCTGTAATGGCGACTGGGCCGCCGCTGCCGAAGTGACTCCCGGGCGGGGGAGTGGGACCTGCGCCTGAGAGGACTGCGGAGAGCCGCAGCTCGGGAGGGGGCTCGCGGCGGGGCGGAGGAGGCCGCCTCTGCGCCTCTCCTTCCTTCCCTGCCGCCCGGCGAATCCCGGGAGCCGGGGCGAGGCGGGTACCCGGTGCGTCCCCGGAGCGGGGAGGCCAGGCCGGGCAGCCCTGGGGCCGGTCGGGGCGGCGTCACTGCACCCTCCGCCAGGCCCCGCGGGATGCACCGTGGGAGCCGAGGGCGGAGGCGACACTCTCAG
Seq A exon
GTAAATTGGCAAGATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCCAATCCAAGGAACTCTCAAAGCAAGGAGACTGTTCAAG
Seq C2 exon
TAGATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882-'1-5,'1-2,4-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.489
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTTCCCTGCCGCCC
R:
CTGAGAAAGTGCATCCCATGA
Band lengths:
215-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]