MmuEX0010975 @ mm9
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:157808274-157820017:-
Coord C1 exon
chr1:157819979-157820017
Coord A exon
chr1:157809605-157809690
Coord C2 exon
chr1:157808274-157808317
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTTGATGACATTATTGCAGGTA
3' ss Score
6.04
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGCACCGTGGGAGCCGAGGGCGGAGGCGACACTCTCAG
Seq A exon
GTAAATTGGCAAGATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCAAATCCCAGGAACTCTCAGAGCAAGGAGACTATTCAAG
Seq C2 exon
ATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-'2-3,'2-1,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.733
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGGCGACACTCTCAG
R:
AGCAGCCTTGGTCTGAGAAAG
Band lengths:
63-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: