MmuEX0010975 @ mm10
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:155961144-155973255:-
Coord C1 exon
chr1:155972849-155973255
Coord A exon
chr1:155962475-155962560
Coord C2 exon
chr1:155961144-155961187
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTTGATGACATTATTGCAGGTA
3' ss Score
6.04
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCCTGACTGCTCCCGCCCTGCCTCGCGCCGCCGCCACCGCCACTGCCGCCGGCGCCGCTCCTCCTCCGTGTCAGTTGTTGAGCTGTAATGGCGACTGGGCCGCCGCTGCCGAAGTGACTCCCGGGGCGGGGGAGCGGGGCCGGACCTGCGCCTGAGAGGACTGCGGAGAGCCGCAGCTCGGGAGGGGGCTCGCGGCGGGGCAGAGGAAGGCCGCCTCTGCGCCTCTCCTTCCTTGCCTGCCGCCCGGCGGATCCCGGGAGCCGGGGCGAGGCGGGCACCCGGTGCGTCCCCGGAGCGGGGAGGCCAGGCCGGGCAGCCCTGGGGCCGGTCGGGGCGGCGTCACTGCACCCTCCGCCAGGCCCCGCGGGATGCACCGTGGGAGCCGAGGGCGGAGGCGACACTCTCAG
Seq A exon
GTAAATTGGCAAGATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCAAATCCCAGGAACTCTCAGAGCAAGGAGACTATTCAAG
Seq C2 exon
ATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-'0-3,'0-1,5-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.733
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTCCTTGCCTGCCG
R:
CTGAGAAAGTGCATCCCATGA
Band lengths:
215-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types