HsaEX6035238 @ hg19
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:179923873-179956421:+
Coord C1 exon
chr1:179923873-179924277
Coord A exon
chr1:179955304-179955389
Coord C2 exon
chr1:179956375-179956421
Length
86 bp
Sequences
Splice sites
3' ss Seq
GAATACTGATGTGATTGCAGGTA
3' ss Score
3.59
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCCCGACTGCTCCCGCCCTGCCTCGCGCCGCCGCCACAGCCGCTGCCGCTGGCGCCGCTCCTCCTCCGTGTCAGTTGTTGGGCTGTAATGGCGACTGGGCCGCCCCTGACGAAGTGACTCCCGGGCCGGGGAGCGGGGCCAGACCTGCGCCAGAGAGAACTGCAGGGAGCCGCAGCTCGGGGGGTGGCTTGCCCTGAGGGAGGGGAGGCAGCCTTTCCGCCTTGTCTTCCTTCCCAGCGGACCGGCGGATCCCCGGAGCCGGTGCGAGGAGGGCACCCGGTGCGTCCCCGGAGCGGGGAGGCCAGGCCGGGCAGCCCTGGGGCCGGTCGGGGCGGCGTCACTGCACCCTCCGCCAGGCTCCGCGGGATGCACCGTGGTAGCCGAGGGCGGAGGCGACACTCTCAG
Seq A exon
GTAAATTGGCAGGATGAGGAGCAGCAAATCAAAAGAGGTGCCTTTACCAAATCCAAGGAACTCTCAAAGCAAGGATACTGTTCAAG
Seq C2 exon
CAGATATAACCACATCGTGGGATGCACTTTCTCAAACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-'0-4,'0-1,2-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCTTCCTTCCCAGCGGA
R:
TGGTTTGAGAAAGTGCATCCCA
Band lengths:
223-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)