BtaALTA0007206-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57966235-57968386:+
Coord C1 exon
chr17:57966235-57966342
Coord A exon
chr17:57968269-57968280
Coord C2 exon
chr17:57968281-57968386
Length
12 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACCCTGCTTTGCCCACACAGGTT
3' ss Score
9.87
Exon sequences
Seq C1 exon
GTTCTCTATTCTCATGAGAAGGTGAAGATGGAAGGCACTATTTCCCAGCAAACCAAACTCATCGATTTTCTGCAAGCCAAAATGGACCAGCCTGCCAAAAAGAAAAAG
Seq A exon
GTTCCTCTGCAG
Seq C2 exon
TACAATGAGCTGAAGGTGGCTCTGGAGAAGGAGAAAGCTCGCTGCGCGGAGCTCGAGGAAGCCCTGCAGAAGACCCGCATCGAGCTCCGCTCCGCCCGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963-43-39,43-38,43-37-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCAAACCAAACTCATCG
R:
AGCGAGCTTTCTCCTTCTCCA
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development