BtaALTA0008745-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25062506-25063915:-
Coord C1 exon
chr2:25063837-25063915
Coord A exon
chr2:25062559-25062595
Coord C2 exon
chr2:25062506-25062558
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
ATTTTAGTCTTTCCTTTTAGGCA
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTATTTGAGCTGGGACACTCCTCAAGAAGTCATTGCTGTCAAGTCAGCTCAGAACAAAAGTTCAACATTGGCCCGACAG
Seq A exon
GCAGGCATTCAACAGCCTGTTTTGCTGTATCTTGCAG
Seq C2 exon
TGTTCCATGTGCTACCTTTTTCACTCATAGGGATTCTGGAGATCAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683-11-9,11-8,11-7-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCTGGGACACTCCTCAA
R:
TCTCCAGAATCCCTATGAGTGA
Band lengths:
117-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development