HsaALTA1018486-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr2:171449879-171453213:+
Coord C1 exon
chr2:171449879-171449957
Coord A exon
chr2:171453124-171453160
Coord C2 exon
chr2:171453161-171453213
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
ATTGTAGTCTTTCCTTCTAGGCA
3' ss Score
7.51
Exon sequences
Seq C1 exon
ATACTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGCAGTGGCCCGGCAG
Seq A exon
GCAGGCATTCAACAACATGTTTTGCTGTACCTTGCAG
Seq C2 exon
TGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGAGATCAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827-15-21,15-20,15-19-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCTGGGACACTCCTCAA
R:
AGAATCCCTACAAGTGAAAAAGGT
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains