MmuALTA1033308-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:71073121-71075536:+
Coord C1 exon
chr2:71073121-71073199
Coord A exon
chr2:71075447-71075483
Coord C2 exon
chr2:71075484-71075536
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCGC
5' ss Score
5.13
3' ss Seq
AATGTATTCTTACCTTGTAGGCA
3' ss Score
8.7
Exon sequences
Seq C1 exon
GTACCTGAGCTGGGACACACCTCAGGAGGTCATCGCAGTGAAGTCGGCTCAGAACAAAGGCTCCGCAGCGGCTCGCCAG
Seq A exon
GCAGGCACTTCACCACCCGTTTTGTTGTACCTCGCAG
Seq C2 exon
TGTTCCGGGTTCTGCCCTTTTCACTTGTAGGGATTCTAGAGATCAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966-18-31,18-30,18-29-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTGAGCTGGGACACACC
R:
TCCCTACAAGTGAAAAGGGCAG
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types