MmuEX0013831 @ mm10
Exon Skipping
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:71063359-71075536:+
Coord C1 exon
chr2:71063359-71063495
Coord A exon
chr2:71073121-71073199
Coord C2 exon
chr2:71075447-71075536
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCATTCCTTCAAAAGGTA
3' ss Score
8.51
5' ss Seq
CAGGTCCGC
5' ss Score
5.13
Exon sequences
Seq C1 exon
GGAGACATACTTCCTGACCCATCAGACTATAAATCCTCACTCATAGCCCTGACTGCTCATAATTGGCTGCTTCGTATATCCGCAACTACAGGGGAAGTCCTGGAGAAAATATACCTTGCTTCCTACTGCAAATTCAG
Seq A exon
GTACCTGAGCTGGGACACACCTCAGGAGGTCATCGCAGTGAAGTCGGCTCAGAACAAAGGCTCCGCAGCGGCTCGCCAG
Seq C2 exon
GCAGGCACTTCACCACCCGTTTTGTTGTACCTCGCAGTGTTCCGGGTTCTGCCCTTTTCACTTGTAGGGATTCTAGAGATCAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966_MULTIEX1-3/4=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATAGCCCTGACTGCTCA
R:
CCCTACAAGTGAAAAGGGCAGA
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types