DreEX0025859 @ danRer10
Exon Skipping
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3538221-3542956:-
Coord C1 exon
chr9:3542820-3542956
Coord A exon
chr9:3539677-3539755
Coord C2 exon
chr9:3538221-3538310
Length
79 bp
Sequences
Splice sites
3' ss Seq
AATATGAGTTTTTCCGACAGATC
3' ss Score
6.33
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GAAAATGTGCTACCTAATGCCTCAGAGCAGAAATCATGTCTGTTGACTCTGACGGCTAACAACTGGTTATATCTGTTGTCGGCGGACACTGGAGAAACACTGCAGCGGGTCTACCTCTCCTCTCGTTTCAAGTTCAG
Seq A exon
ATCGTTAGGTTGGGACTCTTCACAGGAGACATTTTACGTCAAATCCGTTCAATGCAAACAGACTGCTCTAGAACGACAG
Seq C2 exon
GCTGGTGTTGATAATAACATCCTCATGCGCGTGGCTGCATTTCAAGTGTTTCCACTGCAGCTTGTTGGAATGCTGGAGATAAATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000139404fB2207
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTTGACTCTGACGGCT
R:
GCATTCCAACAAGCTGCAGTG
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]