GgaEX6042333 @ galGal4
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17532477-17534079:-
Coord C1 exon
chr7:17533940-17534079
Coord A exon
chr7:17532733-17532811
Coord C2 exon
chr7:17532477-17532566
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTCTTCCTTATCACAAATAGGTA
3' ss Score
7.17
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGGGAAATGCTACCAAATCCATCAGACTATAAACCTTCCCTTATAGTCTTAACAGTGCAGAACTGGCTTCTACGTCTCTCTGCTGACTGTGGGGAAATACTTGAAAAAGTATACCTTGCGGGTTCCTGCTGCAAATTCAG
Seq A exon
GTACCTAAGTTGGGATACTCCTCAAGAAGTAATGGTTGTGAAGTCAGCTCAGAATAAACTCCCTGCAGAAGCACGGCAG
Seq C2 exon
GCAGGTATCCAACAGTCTGTATTGTTCCATCTTGCTGTGTTCCAAGTTTTGCCTCTGTCATTTATTGGAATGCTAGAAATAAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'4-7,'4-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAATGCTACCAAATCCATCA
R:
TGGAACACAGCAAGATGGAAC
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]