BtaEX6009081 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25062506-25064797:-
Coord C1 exon
chr2:25064661-25064797
Coord A exon
chr2:25063837-25063915
Coord C2 exon
chr2:25062506-25062595
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTATTCTTTTAAAAGGTA
3' ss Score
8.71
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GGAGAAATGCTTCCCAGTCCATCAGATTATAAATCTTCACTCATAGCACTGACTGCTCATAATTGGCTGCTTCGTATATCAGCAACTACAGGAAAAGTCCTTGAGAAAATATATCTTGCTTCATATTGCAAATTCAG
Seq A exon
GTATTTGAGCTGGGACACTCCTCAAGAAGTCATTGCTGTCAAGTCAGCTCAGAACAAAAGTTCAACATTGGCCCGACAG
Seq C2 exon
GCAGGCATTCAACAGCCTGTTTTGCTGTATCTTGCAGTGTTCCATGTGCTACCTTTTTCACTCATAGGGATTCTGGAGATCAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683-'10-7,'10-6,11-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAATGCTTCCCAGTCCA
R:
TGGAACACTGCAAGATACAGCA
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]