RnoEX0026369 @ rn6
Exon Skipping
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57654422-57659204:+
Coord C1 exon
chr3:57654422-57654558
Coord A exon
chr3:57656152-57656226
Coord C2 exon
chr3:57659115-57659204
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTGTTCCTTCAAAGGTA
3' ss Score
10.43
5' ss Seq
TCGGCAGGT
5' ss Score
1.34
Exon sequences
Seq C1 exon
GGAGAAATACTTCCTGACCCGTCAGACTATAAATCTTCACTCATAGCACTGACTGCTCATAATTGGCTGCTTCGTATATCAGCAACTACAGGGGAAATCCTGGAGAAAATATACCTTGCTTCCTATTGCAAATTCAG
Seq A exon
GTACCTGAGCTGGGACACTCCTCAAGAGGTCATTGCAGTGAAGTCGGCTCAGAACAAAGGGTCTGCAGCAGCTCG
Seq C2 exon
GCAGGCACTCAGCCTCCTGTTCTGTTGTACCTCGCCGTGTTCCGGGTCCTGCCCTTTTCCCTTGTAGGGATTCTAGAGATCAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403-'5-4,'5-3,6-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAATACTTCCTGACCCGT
R:
GGCGAGGTACAACAGAACAGG
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]