GgaEX6042333 @ galGal3
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19477702-19479308:-
Coord C1 exon
chr7:19479169-19479308
Coord A exon
chr7:19477958-19478036
Coord C2 exon
chr7:19477702-19477791
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTCTTCCTTATCACAAATAGGTA
3' ss Score
7.17
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGGGAAATGCTACCAAATCCATCAGACTATAAACCTTCCCTTATAGTCTTAACAGTGCAGAACTGGCTTCTACGTCTCTCTGCTGACTGTGGGGAAATACTTGAAAAAGTATACCTTGCGGGTTCCTGCTGCAAATTCAG
Seq A exon
GTACCTAAGTTGGGATACTCCTCAAGAAGTAATGGTTGTGAAGTCAGCTCAGAATAAACTCCCTGCAGAAGCACGGCAG
Seq C2 exon
GCAGGTATCCAACAGTCTGTATTGTTCCATCTTGCTGTGTTCCAAGTTTTGCCTCTGTCATTTATTGGAATGCTAGAAATAAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'3-5,'3-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAATGCTACCAAATCCATCA
R:
TGGAACACAGCAAGATGGAAC
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]