BtaALTA0009587-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013362 | DNM2
Description
Bos taurus dynamin 2 (DNM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099369]
Coordinates
chr7:16521475-16523297:+
Coord C1 exon
chr7:16521475-16521726
Coord A exon
chr7:16522400-16522402
Coord C2 exon
chr7:16522403-16523297
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTCTTTATTCTCTTTGCAGCAG
3' ss Score
10.23
Exon sequences
Seq C1 exon
CCCCACTCCGCAGCGCCGGCCCGTATCCAGCGTGCACCCCCCAGGCCGGCCCCCAGCAGTGAGGGGTCCCACCCCAGGGCCACCCCTGATTCCTGTGCCGGTGGGGCCAGCTTCCTTCTCAGCGCCCCCGATCCCATCCCGGCCCGGCCCCCACCCCGGCGTGTTTGCCAACAACGACCCCTTCTCGGCCCCACCTCAGATCCCATCTCGGCCGGCTCGGATTCCACCCGGCATTCCCCCTGGAGTGCCCAG
Seq A exon
CAG
Seq C2 exon
AAGACCCCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCCATCTCTGCTCGACTAGGCTGCAGGGGTTGGGGGTCATGTTCTTGGGAGTCCTCGAGCAGGACCCTCGGTGCAGGAGCTTCGGTGGTCTAAGCCCACCTGCCGCCCCTGGCCCTCCCGTCCCCAGGCGGGACCAGGCTCCCTGCGGGCAGCCCCTGGCTCTTCCCTAACCCTGGCCCCCATCCCCGGCTGGACACAGCACTGAAAGGAGGGCCCCTGGAGCCCCAGAATGAGGGGTGCTGGGGTGTTGCACTTTGGGAGATGGGGTCTCAGGTACCAGAGGAGAGAGCTGCATCTTGAGTGCCATCTTGAAGGAGGGAGCCAGGCTGGTGTGGGGGGTGGGGTTCACCCGGGGGGTCTCTGGCCAGGAAAGCCTGAGTGGACCAGGCCTAAGAAACGGCACCGCAGTGTCCATACCCCATAGGCCTTGCTCTGCTTCTCAGCAGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013362-33-31,33-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCACCCGGCATTCCC
R:
CCTAGTCGAGCAGAGATGGCT
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development