BtaALTA0009685-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000047975 | DOK5
Description
Bos taurus docking protein 5 (DOK5), mRNA. [Source:RefSeq mRNA;Acc:NM_001075939]
Coordinates
chr13:82696338-82699600:+
Coord C1 exon
chr13:82696338-82696457
Coord A exon
chr13:82699411-82699475
Coord C2 exon
chr13:82699476-82699600
Length
65 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
ACCTTTTGTTTTTCTCCCAGAGA
3' ss Score
9.78
Exon sequences
Seq C1 exon
ATCTTGAGGCTGACGAGTGGTGCAAAGTCCTCCAGATGGAGTGTGTGGGGACGCGGGTCAATGACATCAGCCTCGGAGAGCCTGACTTACTGGCCACCGGAGTTGAGAGAGAGCAGAGTG
Seq A exon
AGAGATTCAATGTGTATTTGCTGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAG
Seq C2 exon
ATCACATGTGAGCACATCTGTCTTTGGGACGTCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCGCTAAGCGCGCTGCGGCGGTATGGGCGAGATGCTGCCTGGTTCACTTTTGAGGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047975-1-3,1-2,1-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.8=36.6),PF0217412=IRS=PU(3.1=4.9)
A:
NA
C2:
PF0217412=IRS=FE(95.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAAAGTCCTCCAGATGG
R:
AGCGGCCAAGAGATGAGTTTG
Band lengths:
170-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development