RnoALTA0012584-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013196 | Dok5
Description
docking protein 5 [Source:RGD Symbol;Acc:1562846]
Coordinates
chr3:168438446-168441402:+
Coord C1 exon
chr3:168438446-168438565
Coord A exon
chr3:168441213-168441277
Coord C2 exon
chr3:168441278-168441402
Length
65 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
ACGTTTTGTTTTTCTCCCAGAGA
3' ss Score
8.99
Exon sequences
Seq C1 exon
ATCTTGAGGCAGACGAATGGTGCAAGGTTCTCCAGATAGAGTGTGTGGGGACCAGAATCAATGACATCAGCCTCGGAGAACCTGACTTATTGGCCACTGGGGTGGAACGAGAACAGAGCG
Seq A exon
AGAGATTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAG
Seq C2 exon
ATTACATATGAGTACATCTGTCTTTGGGACATCCAGAATCCCAGAGTTAAACTCATCTCTTGGCCGCTAAGTGCCCTGCGGCGGTATGGACGTGACACCACGTGGTTCACTTTTGAGGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013196-8-7,8-6,8-5,8-4-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
A:
NA
C2:
PF0217412=IRS=FE(64.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATGGTGCAAGGTTCTCC
R:
GCACTTAGCGGCCAAGAGATG
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]