HsaALTA1011011-5/5 @ hg38
Alternative 3'ss
Gene
ENSG00000101134 | DOK5
Description
docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
Coordinates
chr20:54588687-54591805:+
Coord C1 exon
chr20:54588687-54588806
Coord A exon
chr20:54591616-54591680
Coord C2 exon
chr20:54591681-54591805
Length
65 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
ACCTTTTGTTTTTCTCCCAGAGA
3' ss Score
9.78
Exon sequences
Seq C1 exon
ATCTTGAGGCTGATGAGTGGTGCAAAGTACTCCAGATGGAGTGTGTAGGAACACGGATCAATGACATCAGCCTTGGAGAGCCTGACTTACTGGCCACTGGGGTTGAGAGAGAACAGAGTG
Seq A exon
AGAGATTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAG
Seq C2 exon
ATTACATATGAGTATATCTGTCTTTGGGACGTCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCGCTAAGCGCCCTGCGGCGGTATGGACGTGATACTACGTGGTTCACTTTTGAGGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101134-11-18,11-17,11-16,11-15,11-14-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.3=36.6),PF0217412=IRS=PU(2.0=4.9)
A:
NA
C2:
PF0217412=IRS=FE(64.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGATGAGTGGTGCAAAG
R:
AGCGGCCAAGAGATGAGTTTG
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains