BtaALTA0009743-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105582187-105582623:+
Coord C1 exon
chr11:105582187-105582252
Coord A exon
chr11:105582451-105582520
Coord C2 exon
chr11:105582521-105582623
Length
70 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTGAGATCTGTGGGTTTCAGCTA
3' ss Score
4.25
Exon sequences
Seq C1 exon
ACACTCCATGGGCGTGTGCAGCATCCAGAGCAGCCCCCACCGTGAGAACATCTTGGCCACGGGAAG
Seq A exon
CTACGACGAGCATGTTCTCCTCTGGGACACGCGGAGCCTGCGGCAGCCACTGGCGGATGTGCCCGTGCAG
Seq C2 exon
GGAGGGGTGTGGAGGCTCAAGTGGCACCCGTTCCAGCGCGACCTGCTCCTGGCGGCCTGCATGCACGGCGGCTTTAAGATCATCAACTACCAGATGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691-8-13,8-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(61.1=100)
A:
NA
C2:
PF0040027=WD40=PD(25.0=15.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATGGGCGTGTGCAG
R:
CTGCCATCTGGTAGTTGATGA
Band lengths:
163-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development