MmuALTA1016261-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24969050-24969671:+
Coord C1 exon
chr2:24969050-24969115
Coord A exon
chr2:24969506-24969547
Coord C2 exon
chr2:24969548-24969671
Length
42 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CAATGCTTGGATGGTTCCAGCTA
3' ss Score
2.3
Exon sequences
Seq C1 exon
ACATTGCATGGGTGTGTGCAGCATCCAGAGCAGCCCCCATCAGGAGCATATACTGGCAACTGGAAG
Seq A exon
CTATGATGAGCATGTTCTGCTGTGGGACACTCGAAACATAAG
Seq C2 exon
ACAGCCATTGGCGGATGTACCAGTGCAAGGAGGTGTGTGGAGGCTCAAGTGGCACCCAGTTCACCACCATCTACTCCTGGCGGCCTGCATGCACAATGGCTTCAAGATTCTCAACTGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-12-16,12-15,12-14,12-13-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
NA
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCCATCAGGAGCATAT
R:
TTGAAGCCATTGTGCATGCAG
Band lengths:
141-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types