GgaALTA1011343-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008750 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr17:1577973-1578410:+
Coord C1 exon
chr17:1577973-1578038
Coord A exon
NA
Coord C2 exon
chr17:1578238-1578410
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GATCTGTGATACATCTCCAGCTA
3' ss Score
4.71
Exon sequences
Seq C1 exon
ACACTCAATGGGTGTATGCAGCATTCAGTGTAGTCCCCACCGGGAGAACCTCCTGGCTACTGGCAG
Seq A exon
NA
Seq C2 exon
CTATGATGAGCATGTGCTGCTGTGGGACACCAGGAACATGAAGCAGCCGCTGGCAGACACCCATGTTGAAGGTGGAGTCTGGAGGTTGAAGTGGCACCCAACCTGTGATTTTGTGCTGTTAGCAGCCTGCATGCAGAGTGGATTCAAGATCCTTGACTGCCGTGGAAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750-5-12,5-11,5-10-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
NA
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCATTCAGTGTAGTCCCC
R:
ACCTTCAACATGGGTGTCTGC
Band lengths:
122-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]