BtaALTA0010195-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000025410 | EGFL8
Description
Bos taurus EGF-like-domain, multiple 8 (EGFL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001099187]
Coordinates
chr23:27026521-27027205:-
Coord C1 exon
chr23:27027153-27027205
Coord A exon
chr23:27026648-27026736
Coord C2 exon
chr23:27026521-27026647
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
AAGTCCTGCCTGGCTTACAGGGC
3' ss Score
5.08
Exon sequences
Seq C1 exon
AGCTGCTGCTGAGGCTGGTTGGCCTGAAGTCTCCCGGAGAAAGGCAAAGACAG
Seq A exon
GGCACCAGCAGACTGTTCTTGGGAGCGCTGGAGCTGGAGAAGTTACTAGCAGAGGGGCAGGGCCTCTATTAACCTCTTCTTGCCTGCAG
Seq C2 exon
CTGGCAGTCTGAAGTCAAGGAGAATCATGGGGTCCAGGGCTGAGCCGTGCACTGTCTTAGGCGGACTCTGGTTCCTCCTGCTACTGATGACAGGCGAGGGGGCCAAGGGTGGAGCCCTCAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025410-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTTGGCCTGAAGTCTC
R:
CTCTCTTTGAGGGCTCCACC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development