BtaEX0012528 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025410 | EGFL8
Description
Bos taurus EGF-like-domain, multiple 8 (EGFL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001099187]
Coordinates
chr23:27026235-27027205:-
Coord C1 exon
chr23:27027153-27027205
Coord A exon
chr23:27026521-27026647
Coord C2 exon
chr23:27026235-27026357
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAACCTCTTCTTGCCTGCAGCTG
3' ss Score
9.78
5' ss Seq
GAGGTGACA
5' ss Score
3.85
Exon sequences
Seq C1 exon
AGCTGCTGCTGAGGCTGGTTGGCCTGAAGTCTCCCGGAGAAAGGCAAAGACAG
Seq A exon
CTGGCAGTCTGAAGTCAAGGAGAATCATGGGGTCCAGGGCTGAGCCGTGCACTGTCTTAGGCGGACTCTGGTTCCTCCTGCTACTGATGACAGGCGAGGGGGCCAAGGGTGGAGCCCTCAAAGAGAG
Seq C2 exon
TCAGGGGGTCTGCTCCAAGCAGACCCTGGTGGTCCCACTCCGTTACAATGAGTCCTACAGCCAACCTGTATATAAGCCCTATCTGACCCTGTGCTCTGGAAGGCGTGTCTGCAGCACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025410-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(0.1=0.0)
C2:
PF075468=EMI=PU(57.7=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGAGGCTGGTTG
R:
CTGTAGGTGCTGCAGACACG
Band lengths:
174-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development