HsaEX0049847 @ hg19
Exon Skipping
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:9326]
Coordinates
chr6:32130345-32134397:+
Coord C1 exon
chr6:32130345-32130399
Coord A exon
chr6:32133915-32134009
Coord C2 exon
chr6:32134275-32134397
Length
95 bp
Sequences
Splice sites
3' ss Seq
TAACCTTTTCTTGCCTGCAGCCT
3' ss Score
9.59
5' ss Seq
CAGGCGAGG
5' ss Score
2.31
Exon sequences
Seq C1 exon
CTTCTTTGGTTTCTATGATGCAAATGAGACCGTCCTGGAGATGGAGGAGCAACTG
Seq A exon
CCTGTAGGGTCCAGCGTCAAAGCGAATCATGGGGTCCAGGGCTGAGCTGTGCACTCTCTTAGGCGGATTCTCCTTCCTCCTGCTACTGATACCAG
Seq C2 exon
TCAGGGAGTCTGCTCCAAGCAGACACTGGTGGTCCCGCTCCACTACAACGAGTCCTACAGCCAACCAGTGTACAAGCCCTACCTGACCTTGTGCGCTGGGAGGCGCATCTGCAGCACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988-'15-28,'15-26,21-28
Average complexity
S
Mappability confidence:
85%=78=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.076 A=0.085 C2=0.018
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(6.7=100)
A:
PF0208910=Palm_thioest=PD(2.6=40.0)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATGATGCAAATGAGACCGTCC
R:
CTGTAAGTGCTGCAGATGCGC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)