DreEX0029201 @ danRer10
Exon Skipping
Gene
ENSDARG00000100657 | egfl7
Description
EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
Coordinates
chr21:7685113-7703728:-
Coord C1 exon
chr21:7703575-7703728
Coord A exon
chr21:7688363-7688515
Coord C2 exon
chr21:7685113-7685238
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTATTTATCTTTCAGGTA
3' ss Score
12.39
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
Exon sequences
Seq C1 exon
GGGGAGCATCGGGACGGTCACCGCGCGGTGCTCTTCATCAGACTGAAGAAGAGTTTATAAGAAATGCTGGCGATGGAGAGGCGCGTCAGAGCGCGCGACAGGTGGACCGAATGGCCTCGGGCTCGGCAAGGCATCACGTGATATTACTGACAGG
Seq A exon
GTAGCGGATTGACAGACCTGCAGTCTCTCTTTCTGCTGTCAGACACACCTGAGAAACAGACAGACTAACAGAGATGTACACAGCGCTTCTGCTCTCCTCCTCTTTGTTTCTCCTGCATGTGACCAGCACACCTCAGACTCACAGTCATCACGG
Seq C2 exon
GAGGAGAGTGTGTGTTGGTGATGTCTGGAGTCGTCGCGTGTCTTACAGCACAGAGTCTTTTCTTCAGCCTGTACACAAACCCTACATCACCATGTGCCAAAACCACCGCATGTGCAGCACGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100657-'0-1,'0-0,3-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(0.1=0.0)
C2:
PF075468=EMI=PU(56.8=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGCTCTTCATCAGACTG
R:
CATGCGGTGGTTTTGGCACAT
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]