GgaEX1021773 @ galGal3
Exon Skipping
Gene
ENSGALG00000002420 | EGFL7
Description
NA
Coordinates
chr17:8434317-8440225:-
Coord C1 exon
chr17:8440157-8440225
Coord A exon
chr17:8435750-8435937
Coord C2 exon
chr17:8434317-8434439
Length
188 bp
Sequences
Splice sites
3' ss Seq
TGCTATCCTCTCTGTTCCAGAGT
3' ss Score
9.95
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
TGAGAAACCAAGATGCTCCTTAAGGAAGGGATCCGCGCTCGGGCCGGGTGACGGAGCGCTGCGGATAAG
Seq A exon
AGTTCGCCGCTGAACAGCAAGCCATGCAGTAGGAGCCCACGCTTCCCACTGAGGAGTGACCCCGGTGTGTGCCACACAGCCCAGAGCGCTGCAGGGAGGGGACAGGACATGCACCGAATCAGCTGCCTTCTTTCGGGACTCGCCTTCATCCTCAGTGCCACCAGCACTGACAGCTTTGCCCGGGTGGG
Seq C2 exon
CCGCAGGACCTGTGCTGCAGAGCCGCGGAGCCGCACAGCCACCCACACCGAGTCCCACGTGCAGCCTGTGTACCTGCCCTACCTCACCACCTGCCAGGGCCACCGCCTGTGCAGCACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420-'2-2,'2-1,5-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(0.1=0.0)
C2:
PF075468=EMI=PU(57.7=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAACCAAGATGCTCCTT
R:
CTGTAGGTGCTGCACAGGC
Band lengths:
192-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]