GgaEX1021773 @ galGal4
Exon Skipping
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7751040-7756982:-
Coord C1 exon
chr17:7756882-7756982
Coord A exon
chr17:7752473-7752660
Coord C2 exon
chr17:7751040-7751162
Length
188 bp
Sequences
Splice sites
3' ss Seq
TGCTATCCTCTCTGTTCCAGAGT
3' ss Score
9.95
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GAATGTGACCATGGGCTTTTCTGTTCTGACAGTGAGAAACCAAGATGCTCCTTAAGGAAGGGATCCGCGCTCGGGCCGGGTGACGGAGCGCTGCGGATAAG
Seq A exon
AGTTCGCCGCTGAACAGCAAGCCATGCAGTAGGAGCCCACGCTTCCCACTGAGGAGTGACCCCGGTGTGTGCCACACAGCCCAGAGCGCTGCAGGGAGGGGACAGGACATGCACCGAATCAGCTGCCTTCTTTCGGGACTCGCCTTCATCCTCAGTGCCACCAGCACTGACAGCTTTGCCCGGGTGGG
Seq C2 exon
CCGCAGGACCTGTGCTGCAGAGCCGCGGAGCCGCACAGCCACCCACACCGAGTCCCACGTGCAGCCTGTGTACCTGCCCTACCTCACCACCTGCCAGGGCCACCGCCTGTGCAGCACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420-'0-1,'0-0,9-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(0.1=0.0)
C2:
PF075468=EMI=PU(57.7=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACCATGGGCTTTTCTGT
R:
CTGTAGGTGCTGCACAGGC
Band lengths:
221-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]