MmuEX6077139 @ mm10
Exon Skipping
Gene
ENSMUSG00000015467 | Egfl8
Description
EGF-like domain 8 [Source:MGI Symbol;Acc:MGI:1932094]
Coordinates
chr17:34614879-34615971:-
Coord C1 exon
chr17:34615907-34615971
Coord A exon
chr17:34615167-34615286
Coord C2 exon
chr17:34614879-34615001
Length
120 bp
Sequences
Splice sites
3' ss Seq
CAATAACCACTTGTCTGCAGCCC
3' ss Score
3.45
5' ss Seq
GAGGTGACA
5' ss Score
3.85
Exon sequences
Seq C1 exon
ATAATTCAGGGACCTCCGAAATTGTGTAGGTCCTGCTGGAGCAACACTTGGCTGAAGAGAAGAAG
Seq A exon
CCCTCAGAGTGAGGGAGCCATGGGGCTCTGGGCTGAGCTGTGCATTTCCCTACGAGGACTCTCATTCTTCCTGGTGCTGATGACGGGCGAAGGGACCAGAGGAGGATCTTTCAAAGAGAG
Seq C2 exon
TTTGGGAGTGTGCTCCAAGCAGACGCTGCTGGTTCCTCTCCGTTACAACGAGTCCTATAGTCAACCGGTGTACAAACCCTACCTGACCTTGTGTGCGGGGAGGCGCATATGTAGCACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015467-'1-6,'1-5,3-6=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(0.1=0.0)
C2:
PF075468=EMI=PU(57.7=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAGGGACCTCCGAAATTGT
R:
CTGTAGGTGCTACATATGCGCC
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types