BtaINT0054759 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025410 | EGFL8
Description
Bos taurus EGF-like-domain, multiple 8 (EGFL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001099187]
Coordinates
chr23:27026521-27027205:-
Coord C1 exon
chr23:27027153-27027205
Coord A exon
chr23:27026648-27027152
Coord C2 exon
chr23:27026521-27026647
Length
505 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TAACCTCTTCTTGCCTGCAGCTG
3' ss Score
9.78
Exon sequences
Seq C1 exon
AGCTGCTGCTGAGGCTGGTTGGCCTGAAGTCTCCCGGAGAAAGGCAAAGACAG
Seq A exon
GTGGGGAGAGAATGTCAATGGGGAAAGAGTGGGGGTCACTAAGAGTCTTAGAGTGAGTGTGGGTTGGAGGTGTTGTTTGAGTAAAGGGTCCAGGGTGTATGTGGTGGTGGGGTTGTGAGGGTAGCATGAGTGTGCTTAAGGTGGTGCCTCCAGGTGCGTGGGTTGTATACAAGGTGTAAAGGGGTGTAATGGTGAATATCTGAGATTTTGAAGGTAGGAAGATTAGGATGGAAGAGGGCACATCAGAGATAGGAGGGGCCTGAGGGGAGGTGGAGGGAGTGGGTCAGGCTGTGAGCTTGTATGGTGCTGCATGGACCATGATGTGCTAAAGGATGGTGGGTGTTAAATATGTGCAGGTGCTGACAATCCTGGTGGCTAGTGCAAGTGTGCAAATGAAAGTCCTGCCTGGCTTACAGGGCACCAGCAGACTGTTCTTGGGAGCGCTGGAGCTGGAGAAGTTACTAGCAGAGGGGCAGGGCCTCTATTAACCTCTTCTTGCCTGCAG
Seq C2 exon
CTGGCAGTCTGAAGTCAAGGAGAATCATGGGGTCCAGGGCTGAGCCGTGCACTGTCTTAGGCGGACTCTGGTTCCTCCTGCTACTGATGACAGGCGAGGGGGCCAAGGGTGGAGCCCTCAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025410:ENSBTAT00000005817:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]