BtaALTA0011042-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000048071 | EXOSC2
Description
Bos taurus exosome component 2 (EXOSC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046561]
Coordinates
chr11:101003670-101005065:+
Coord C1 exon
chr11:101003670-101003738
Coord A exon
chr11:101004889-101004892
Coord C2 exon
chr11:101004893-101005065
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CGATATATATATTTTTTTAGCTA
3' ss Score
5.81
Exon sequences
Seq C1 exon
GCTGAGGTCCAGGCAGTGTTCTCTGATGGAGCCGTCTCTCTGCACACGAGGAGTCTCAAATACGGAAAA
Seq A exon
CTAG
Seq C2 exon
GTCAGGGCGTTTTGGTTCAGGTCTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTCCATGACCTGCCGTGCGGCGCCTCAGTGATCCTGGGCAACAACGGCTTCATCTGGGTCTACCCAACCCCCGAGCACAAAGAAGACGATGCAGGGGGCTTCATCGCAAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048071-9-8,9-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGGAGCCGTCTCTCTG
R:
AAGTGGGTCTTCTGCCGTTTC
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development